{
  "_id": "6ad573f2d423e4b0c576c14e",
  "Package": "CardinalIO",
  "Type": "Package",
  "Title": "Read and write mass spectrometry imaging files",
  "Version": "1.11.0",
  "Date": "2023-8-29",
  "Authors@R": "person(\"Kylie Ariel\", \"Bemis\",\nemail = \"k.bemis@northeastern.edu\",\nrole = c(\"aut\", \"cre\"))",
  "Description": "Fast and efficient reading and writing of mass\nspectrometry imaging data files. Supports imzML and Analyze 7.5\nformats. Provides ontologies for mass spectrometry imaging.",
  "License": "Artistic-2.0 | file LICENSE",
  "VignetteBuilder": "knitr",
  "biocViews": "Software, Infrastructure, DataImport, MassSpectrometry,\nImagingMassSpectrometry",
  "URL": "http://www.cardinalmsi.org",
  "BugReports": "https://github.com/kuwisdelu/CardinalIO/issues",
  "Repository": "https://cardinalverse.r-universe.dev",
  "Date/Publication": "2026-10-18 23:28:35 UTC",
  "RemoteUrl": "https://github.com/Cardinalverse/CardinalIO",
  "RemoteRef": "HEAD",
  "RemoteSha": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-19 01:29:29 UTC",
    "User": "root"
  },
  "Author": "Kylie Ariel Bemis [aut, cre]",
  "Maintainer": "Kylie Ariel Bemis <k.bemis@northeastern.edu>",
  "_user": "cardinalverse",
  "_type": "src",
  "_file": "CardinalIO_1.11.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/76a1169eea8122d58e64bf403269a1b92fef32b50677ef0f4caf4f2c5c8c3bc9",
  "_filesize": 949010,
  "_sha256": "76a1169eea8122d58e64bf403269a1b92fef32b50677ef0f4caf4f2c5c8c3bc9",
  "_expires": "2027-01-27T01:35:40.000Z",
  "_created": "2026-10-19T01:29:29.000Z",
  "_published": "2026-10-19T01:35:45.900Z",
  "_buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117847353038,
      "time": 185,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12157393654"
    },
    {
      "job": 117847352997,
      "time": 226,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12158211374"
    },
    {
      "job": 117847352982,
      "time": 179,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12158425503"
    },
    {
      "job": 117847353041,
      "time": 188,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12157986567"
    },
    {
      "job": 117847352984,
      "time": 189,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12157922798"
    },
    {
      "job": 117847353013,
      "time": 262,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12157634363"
    },
    {
      "job": 117847353033,
      "time": 140,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12157034638"
    },
    {
      "job": 117847353137,
      "time": 312,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12157803733"
    },
    {
      "job": 117846599855,
      "time": 199,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12158140520"
    },
    {
      "job": 117847352931,
      "time": 123,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12157564648"
    },
    {
      "job": 117847353128,
      "time": 247,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12157694158"
    },
    {
      "job": 117847353132,
      "time": 203,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12158465013"
    },
    {
      "job": 117847353019,
      "time": 122,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12158285408"
    },
    {
      "job": 117847352970,
      "time": 260,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12157901893"
    },
    {
      "job": 117847353098,
      "time": 154,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12157878008"
    }
  ],
  "_upstream": "https://github.com/Cardinalverse/CardinalIO",
  "_commit": {
    "id": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
    "author": "Kylie Bemis <k.bemis@northeastern.edu>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #4 from Cardinalverse/cardinalverse-build",
    "time": 1792366115
  },
  "_maintainer": {
    "name": "Kylie Ariel Bemis",
    "email": "k.bemis@northeastern.edu",
    "login": "kuwisdelu",
    "description": "Assistant Teaching Professor at Northeastern University. Lead developer of the Cardinal R package for mass spectrometry imaging analysis.",
    "uuid": 5960420
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4",
      "role": "Depends"
    },
    {
      "package": "BiocParallel",
      "role": "Depends"
    },
    {
      "package": "matter",
      "role": "Depends"
    },
    {
      "package": "ontologyIndex",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cardinalverse",
  "_selfowned": true,
  "_usedby": 5,
  "_updates": [
    {
      "week": "2026-33",
      "n": 1
    },
    {
      "week": "2026-42",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.11.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.10.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "software",
    "infrastructure",
    "dataimport",
    "massspectrometry",
    "imagingmassspectrometry",
    "cpp"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "kuwisdelu",
      "count": 65,
      "uuid": 5960420
    },
    {
      "user": "jwokaty",
      "count": 12,
      "uuid": 1744257
    },
    {
      "user": "sarahkelley42",
      "count": 1,
      "uuid": 254313023
    }
  ],
  "_userbio": {
    "uuid": 193436250,
    "type": "organization",
    "name": "Cardinalverse",
    "followers": 12,
    "description": "Research computing for spatial biology"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CardinalIO"
  },
  "_devurl": "https://github.com/kuwisdelu/cardinalio",
  "_searchresults": 8,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/CardinalIO.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/cardinalverse/cardinalio",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    "exampleImzMLFile",
    "find_descendants_in",
    "find_term",
    "find_terms",
    "get_obo",
    "ImzMeta",
    "metadata",
    "parseAnalyze",
    "parseImzML",
    "valid_terms",
    "writeAnalyze",
    "writeImzML"
  ],
  "_help": [
    {
      "page": "CardinalIO-package",
      "title": "CardinalIO package",
      "topics": [
        "CardinalIO-package",
        "CardinalIO"
      ]
    },
    {
      "page": "exampleImzMLFile",
      "title": "Example imzML files",
      "topics": [
        "exampleImzMLFile"
      ]
    },
    {
      "page": "get_obo",
      "title": "Mass spectrometry imaging ontology",
      "topics": [
        "find_descendants_in",
        "find_term",
        "find_terms",
        "get_obo",
        "valid_terms"
      ]
    },
    {
      "page": "ImzMeta",
      "title": "Mass spectrometry imaging experimental metadata",
      "topics": [
        "class:ImzMeta",
        "ImzMeta",
        "ImzMeta-class",
        "[[<-,ImzMeta-method"
      ]
    },
    {
      "page": "parseAnalyze",
      "title": "Parse an Analyze 7.5 File",
      "topics": [
        "Analyze75",
        "Analyze75-class",
        "class:Analyze75",
        "parseAnalyze"
      ]
    },
    {
      "page": "parseImzML",
      "title": "Parse an imzML File",
      "topics": [
        "class:ImzML",
        "ImzML",
        "ImzML-class",
        "parseImzML"
      ]
    },
    {
      "page": "writeAnalyze",
      "title": "Write an Analyze 7.5 File",
      "topics": [
        "writeAnalyze",
        "writeAnalyze,array-method",
        "writeAnalyze,matter_arr-method",
        "writeAnalyze,sparse_arr-method"
      ]
    },
    {
      "page": "writeImzML",
      "title": "Write an imzML File",
      "topics": [
        "writeImzML",
        "writeImzML,ImzMeta-method",
        "writeImzML,ImzML-method"
      ]
    }
  ],
  "_readme": "https://github.com/Cardinalverse/CardinalIO/raw/HEAD/README.md",
  "_rundeps": [
    "BH",
    "BiocGenerics",
    "BiocParallel",
    "codetools",
    "cpp11",
    "digest",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "irlba",
    "lambda.r",
    "lattice",
    "Matrix",
    "matter",
    "ontologyIndex",
    "ProtGenerics",
    "S4Vectors",
    "snow"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "CardinalIO-guide.Rmd",
      "filename": "CardinalIO-guide.html",
      "title": "CardinalIO: Parsing and writing imzML files",
      "author": "Kylie Ariel Bemis",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Structure of imzML files",
        "XML",
        "Binary",
        "Continuous",
        "Processed",
        "Additional notes",
        "Parsing imzML files",
        "Experimental metadata",
        "File description",
        "Scan settings",
        "Software",
        "Instrument configuration",
        "Data processing",
        "Spectrum metadata",
        "Positions",
        "m/z metadata",
        "Intensity metadata",
        "Mass spectra",
        "Tracking experimental metadata",
        "The ImzMeta class",
        "Conversion between ImzML and ImzMeta",
        "Minimum reporting guidelines",
        "Writing imzML files",
        "Writing a file from ImzML metadata",
        "Writing a file from ImzMeta metadata",
        "Session information"
      ],
      "created": "2023-08-05 20:56:39",
      "modified": "2023-08-12 04:23:59",
      "commits": 4
    }
  ],
  "_score": 6.079181246047625,
  "_indexed": false,
  "_nocasepkg": "cardinalio",
  "_universes": [
    "cardinalverse"
  ],
  "_indexurl": "https://bioc.r-universe.dev/CardinalIO",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.11.0",
      "date": "2026-10-19T01:32:12.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/9ee51a0720ed51e37ce604c94c91d122ce301d69e1ccfa059463032433b7942a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.11.0",
      "date": "2026-10-19T01:32:37.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/2c0d810ecd039b853fb4a5463af85b64e73636d04404c92b496a3326b3f8483c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.11.0",
      "date": "2026-10-19T01:32:08.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/05bc5aeea5eca253611f0c67946258487fc2de051207e8bc07a79e05913617aa",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.11.0",
      "date": "2026-10-19T01:32:02.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/4c9037e03f80b5f834ed1cd80e68073d0d20c402d87b7dcf83e75a4823b9cf55",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.11.0",
      "date": "2026-10-19T01:31:52.000Z",
      "arch": "aarch64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/4d6af857cd00bcb01d349bbc51795bc01ec91372e337c248500713b214dfbc85",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.11.0",
      "date": "2026-10-19T01:32:34.000Z",
      "arch": "x86_64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/f5e21c9e0ace3fc0e8bfc7f6e08fb7b1732e72760fefa4d2ee98497713653e8f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.11.0",
      "date": "2026-10-19T01:31:26.000Z",
      "arch": "aarch64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/590fa37f62474b6e9fe78ca123e820222f1bc277fc0627dd7d1bafed59c81b71",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.11.0",
      "date": "2026-10-19T01:33:36.000Z",
      "arch": "x86_64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/8947dcb2bc35369549c519832d2009310e3ce70375d53ffdaccf8f865a131391",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.11.0",
      "date": "2026-10-19T01:31:59.000Z",
      "arch": "emscripten",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/96dfd95571c5c4f839ceeaac58a604b89f13c77273735cd9d0306b8ff228e1bb",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.11.0",
      "date": "2026-10-19T01:32:50.000Z",
      "arch": "aarch64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/4df29313ad55eab7cae0fa56f876fec3285866d6c01b97784a95f91e582f0285",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.11.0",
      "date": "2026-10-19T01:31:12.000Z",
      "arch": "x86_64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/212402ceec1e0f9b65619c3f0ddbfd5d8bec0d9987f6be1c176110996747bfab",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.11.0",
      "date": "2026-10-19T01:30:57.000Z",
      "arch": "x86_64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/88acbbebfd7e9f9ebf81427e0a3a52f12f0937aee81229d482c19db72e865e79",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.11.0",
      "date": "2026-10-19T01:33:12.000Z",
      "arch": "aarch64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/290d3d4b075242fede96afc8503675989873104ae51e8e5dbbb62d1c1378f3a8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.11.0",
      "date": "2026-10-19T01:31:06.000Z",
      "arch": "x86_64",
      "commit": "afb6eaae1f4a91d8f7b57a13bea46c19598d40c1",
      "fileid": "https://r2.ropensci.org/72d1c27063a0e187866dc77031d3cdb92671346a943499c34da413ba7037dd34",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cardinalverse/actions/runs/39185355625"
    }
  ]
}